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Michael Krone

Dipl.-Inf. Michael Krone

Büro: VISUS-Gebäude 00.107

Universität Stuttgart
Allmandring 19
70569 Stuttgart

Telefonnummer: +49 (711) 685-88623

Telefaxnummer: +49 (711) 685-88620

E-Mail-Adresse: michael.krone@vis.uni-stuttgart.de

Forschung

SFB 716 "Dynamische Simulation von Systemen mit großen Teilchenzahlen"

Teilprojekt D.4 "Interaktive Visualisierung dynamischer, komplexer Eigenschaften von Protein-Lösungsmittel-Systemen"

In diesem Teilprojekt werden neue Ansätze zur interaktiven Visualisierung von Protein-Lösungsmittel-Systemen erforscht. Besonderes Augenmerk liegt hierbei auf den spezifischen Eigenschaften des Lösungsmittels, da diese mit herkömmlichen heute verfügbaren Werkzeugen nicht adäquat analysiert werden können. Ein weiterer wichtiger Aspekt ist die interaktive und explorative visuelle Analyse der Simulationsdaten, welche durch Parallelisierung und effiziente Algorithmen zur Analyse und Visualisierung erreicht werden soll. Insbesondere die Ausnutzung moderner Graphikkarten zur Beschleunigung der Berechnung spielt eine wichtige Rolle.

Weiter Informationen und Downloads sind auf der MegaMol-Entwickler-Seite verfügbar.

Lehre

Studien- und Diplomarbeiten, Praktika:

offen:

  • Themen auf Anfrage!

laufend:

  • Audio-Visuelle Analyse von Moleculardynamik-Simulation
  • GPU-accelerated Smoothed Particle Hydrodynamics

beendet:

  • Remote-Steuerung mittels Android-Geräten (SS13/WS14)
  • DAAD Research Internships in Science and Engineering (RISE) "Mobile Remote Rendering for a Molecular Visualization Framework" (SS13)
  • Vergleichende Visualisierung elektrostatischer Felder (WS12/SS13)
  • Visualisierung von Polarisationsdomänen in ferroelektrischen Materialien (SS12)
  • Molekularvisualisierung und Remote-Steuerung auf mobilen Endgeräten (WS11/SS12)
  • Analyse der Oberflächenstruktur von Proteinen (SS11/WS11)
  • Interaktive Berechnung und Visualisierung der Sekundärstruktur von Proteinen (SS11/WS11)
  • DAAD Research Internships in Science and Engineering (RISE) "Haptic Simulation Steering for Molecular Dynamics Simulations" (SS11)
  • Semitransparente Moleküloberflächen mittels Depth Peeling (WS09/SS10)

Lehrveranstaltungen:

  • Seminar "High Performance Visualization" (WS13)
  • Seminar "Computerspiele" (WS12)
  • Übung "Bildsynthese" (SS12)
  • Übung "Geometrische Modellierung und Animation" (WS11)
  • Hauptseminar "Interaktive Visualisierung großer Datensätze" (SS11)
  • Studienprojekt "LaVida" (WS10/SS11)
  • Seminar "Algorithmen für Computerspiele" (SS10)
  • Übung "Visual Computing" (WS09)
  • Fachpraktikum "Graphikprogrammierung" (SS09)

Sonstiges

Bilder

Visualisierungstechniken für Proteine:

Publikationen

2014

Artikel

Visual Analysis for Space-Time Aggregation of Biomolecular Simulations
Ertl, Thomas; Krone, Michael; Kesselheim, Stefan; Scharnowski, Katrin; Reina, Guido; Holm, Christian: Visual Analysis for Space-Time Aggregation of Biomolecular Simulations.
Faraday Discussions (2014).
MegaMol – A Prototyping Framework for Particle-based Visualization
Grottel, Sebastian; Krone, Michael; Müller, Christoph; Reina, Guido; Ertl, Thomas: MegaMol – A Prototyping Framework for Particle-based Visualization.
IEEE Transactions on Visualization and Computer Graphics (2014).
[Noch nicht erschienen]
Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles
Heinrich, Julian; Krone, Michael; Weiskopf, Daniel; O'Donoghue, Seán: Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles.
Faraday Discussions (2014).
Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions
Lawonn, Kai; Krone, Michael; Ertl, Thomas; Preim, Bernhard: Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions.
Computer Graphics Forum 33 (3), S. 181-190 (2014).
Comparative Visualization of Molecular Surfaces Using Deformable Models
Scharnowski, Katrin; Krone, Michael; Reina, Guido; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Comparative Visualization of Molecular Surfaces Using Deformable Models.
Computer Graphics Forum 33 (3), S. 191-200 (2014).

Paper

Evaluation of Visualizations for Interface Analysis of SPH
Krone, Michael; Huber, Markus; Scharnowski, Katrin; Hirschler, Manuel; Kauker, Daniel; Reina, Guido; Nieken, Ulrich; Weiskopf, Daniel; Ertl, Thomas: Evaluation of Visualizations for Interface Analysis of SPH.
In: EuroVis 2014 Short Papers 3, S. 109-113 (2014).
Visual Analysis of Dynamic Protein Cavities and Binding Sites
Krone, Michael; Kauker, Daniel; Reina, Guido; Ertl, Thomas: Visual Analysis of Dynamic Protein Cavities and Binding Sites.
In: IEEE PacificVis - Visualization Notes 1, S. 301-305 (2014).
Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL
Mwalongo, Finian; Krone, Michael; Karch, Grzegorz K.; Becher, Michael; Reina, Guido; Ertl, Thomas: Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL.
In: International Conference on 3D Web Technology (Web3D'14) 19, S. 133-141 (2014).

2013

Artikel

Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing
Falk, Martin; Krone, Michael; Ertl, Thomas: Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing.
Computer Graphics Forum 32 (8), S. 195-206 (2013).
Evaluation of per-pixel linked lists for distributed rendering and comparative analysis
Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Evaluation of per-pixel linked lists for distributed rendering and comparative analysis.
Computing and Visualization in Science 15 (3), S. 111-121 (2013).
Interactive Extraction and Tracking of Biomolecular Surfaces Features
Krone, Michael; Reina, Guido; Schulz, Christoph; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Interactive Extraction and Tracking of Biomolecular Surfaces Features.
Computer Graphics Forum 32 (3), S. 331–340 (2013).
2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate
Scharnowski, Katrin; Krone, Michael; Sadlo, Filip; Beck, Philipp; Roth, Johannes; Trebin, Hans-Rainer; Ertl, Thomas: 2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate.
IEEE Computer Graphics & Applications 33 (5), S. 9-17 (2013).

Paper

Rendering Molecular Surfaces using Order-Independent Transparency
Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Rendering Molecular Surfaces using Order-Independent Transparency.
In: Eurographics Symposium on Parallel Graphics and Visualization (EGPGV) 13, S. 33-40 (2013).

2012

Paper

Atomistic Visualization of Mesoscopic Whole-Cell Simulations
Falk, Martin; Krone, Michael; Ertl, Thomas: Atomistic Visualization of Mesoscopic Whole-Cell Simulations.
In: EG Workshop on Visual Computing for Biology and Medicine (VCBM), S. 123-130 (2012).
Object-Space Ambient Occlusion for Molecular Dynamics
Grottel, Sebastian; Krone, Michael; Scharnowski, Katrin; Ertl, Thomas: Object-Space Ambient Occlusion for Molecular Dynamics.
In: Proceedings of IEEE Pacific Visualization Symposium 2012, S. 209-216 (2012).
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories
Krone, Michael; Stone, John E.; Ertl, Thomas; Schulten, Klaus: Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories.
In: EuroVis 2012 Short Papers 1, S. 67-71 (2012).

2011

Artikel

GPU-powered tools boost molecular visualization
Chavent, Matthieu; Lévy, Bruno; Krone, Michael; Bidmon, Katrin; Nominé, Jean-Philippe; Ertl, Thomas; Baaden, Marc: GPU-powered tools boost molecular visualization.
Briefings in Bioinformatics 12 (6), S. 689-701 (2011).
Interactive Exploration of Protein Cavities
Krone, Michael; Falk, Martin; Rehm, Sascha; Pleiss, Jürgen; Ertl, Thomas: Interactive Exploration of Protein Cavities.
Computer Graphics Forum 30 (3), S. 673-682 (2011).

Paper

Parallel Contour-Buildup Algorithm for the Molecular Surface
Krone, Michael; Grottel, Sebastian; Ertl, Thomas: Parallel Contour-Buildup Algorithm for the Molecular Surface.
In: Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), S. 17-22 (2011).
Interactive Exploration of Polymer-Solvent Interactions
Thomaß, Bertram; Walter, Jonathan; Krone, Michael; Hasse, Hans; Ertl, Thomas: Interactive Exploration of Polymer-Solvent Interactions.
In: International Workshop on Vision, Modeling and Visualization 16, S. 301-308 (2011).

2010

Paper

Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces
Krone, Michael; Dachsbacher, Carsten; Ertl, Thomas: Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces.
In: International Conference On Bioinformatics and Computational Biology 2010, S. 402-405 (2010).

2009

Artikel

Interactive Visualization of Molecular Surface Dynamics
Krone, Michael; Bidmon, Katrin; Ertl, Thomas: Interactive Visualization of Molecular Surface Dynamics.
IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009) 15 (6), S. 1391-1398 (2009).

2008

Paper

GPU-based Visualisation of Protein Secondary Structure
Krone, Michael; Bidmon, Katrin; Ertl, Thomas: GPU-based Visualisation of Protein Secondary Structure.
In: Proceedings of TP.CG'08, S. 115-122 (2008).