Informationen für

Logo VISUS

Dr. rer. nat. Michael Krone

Dr. rer. nat.  Michael Krone

Büro: VISUS-Gebäude 00.107

Universität Stuttgart
Allmandring 19
70569 Stuttgart

Telefonnummer: +49 (711) 685-88623

Telefaxnummer: +49 (711) 685-88620

E-Mail-Adresse: michael.krone@vis.uni-stuttgart.de

Forschung

SFB 716 "Dynamische Simulation von Systemen mit großen Teilchenzahlen"

Teilprojekt D.4 "Interaktive Visualisierung dynamischer, komplexer Eigenschaften von Protein-Lösungsmittel-Systemen"

In diesem Teilprojekt werden neue Ansätze zur interaktiven Visualisierung von Protein-Lösungsmittel-Systemen erforscht. Besonderes Augenmerk liegt hierbei auf den spezifischen Eigenschaften des Lösungsmittels, da diese mit herkömmlichen heute verfügbaren Werkzeugen nicht adäquat analysiert werden können. Ein weiterer wichtiger Aspekt ist die interaktive und explorative visuelle Analyse der Simulationsdaten, welche durch Parallelisierung und effiziente Algorithmen zur Analyse und Visualisierung erreicht werden soll. Insbesondere die Ausnutzung moderner Graphikkarten zur Beschleunigung der Berechnung spielt eine wichtige Rolle.

Weiter Informationen und Downloads sind auf der MegaMol-Entwickler-Seite verfügbar.

Lehre

Studien- und Diplomarbeiten, Praktika:

offen:

  • Themen auf Anfrage!

laufend:

  • Gestensteuerung von Visualisierungen im Museumskontext (SS2016)
  • Visualisierung der Unsicherheit der Sekundärstruktur von Proteinen (SS2016)

beendet:

  • Visual Debugging of SPH Simulations (SS16/WS16)
  • Ambient Occlusion und Echtzeit-Schatten für Partikeldaten (WS15)
  • Real-time Ray Tracing of Volumetric Data (WS15)
  • Abbildung von Moleküloberflächen mit beliebigem Genus auf eine Kugel (SS15/WS15)
  • Identifikation und Visualisierung von Halos in kosmologischen Simulationen (SS15/WS15)
  • GPU-accelerated Smoothed Particle Hydrodynamics (SS14)
  • Audio-Visuelle Analyse von Moleculardynamik-Simulation (SS14)
  • Remote-Steuerung mittels Android-Geräten (SS13/WS14)
  • DAAD Research Internships in Science and Engineering (RISE) "Mobile Remote Rendering for a Molecular Visualization Framework" (SS13)
  • Vergleichende Visualisierung elektrostatischer Felder (WS12/SS13)
  • Visualisierung von Polarisationsdomänen in ferroelektrischen Materialien (SS12)
  • Molekularvisualisierung und Remote-Steuerung auf mobilen Endgeräten (WS11/SS12)
  • Analyse der Oberflächenstruktur von Proteinen (SS11/WS11)
  • Interaktive Berechnung und Visualisierung der Sekundärstruktur von Proteinen (SS11/WS11)
  • DAAD Research Internships in Science and Engineering (RISE) "Haptic Simulation Steering for Molecular Dynamics Simulations" (SS11)
  • Semitransparente Moleküloberflächen mittels Depth Peeling (WS09/SS10)

Lehrveranstaltungen:

  • Vorlesung "Computergraphik" (WS16)
  • Seminar "GPU-Methoden für die Visualisierung und Computergraphik" (SS16)
  • Vorlesung "Programmieren für Medieninformatik" (WS15)
  • Studienprojekt "STUPRO" (WS14/SS15)
  • Seminar "High Performance Visualization" (WS13)
  • Seminar "Computerspiele" (WS12)
  • Übung "Bildsynthese" (SS12)
  • Übung "Geometrische Modellierung und Animation" (WS11)
  • Hauptseminar "Interaktive Visualisierung großer Datensätze" (SS11)
  • Studienprojekt "LaVida" (WS10/SS11)
  • Seminar "Algorithmen für Computerspiele" (SS10)
  • Übung "Visual Computing" (WS09)
  • Fachpraktikum "Graphikprogrammierung" (SS09)

Preise und Auszeichnungen

  • IEEE VisWeek 2009: Honorable Mention für "Interactive Visualization of Molecular Surface Dynamics"
  • IEEE VisWeek 2012: Gewinner des IEEE SciVis Contest 2012 (K. Scharnowski, M. Krone, P. Beck und F. Sadlo: "Visualization of Polarization Domains in Barium Titanate").
  • Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM) 2012: Best Paper Award für "Atomistic Visualization of Mesoscopic Whole-Cell Simulations"
  • IEEE VIS 2016: Gewinner des IEEE SciVis Contest 2016 (S. Grottel, P. Gralka, J. Staib, K. Schatz, G. K. Karch, M. Hirschler, M. Krone, G. Reina, S. Gumhold, T. Ertl: "Visual and Structural Analysis of Point-based Simulation Ensembles").
  • IEEE VIS 2016 Workshop on Visualization in Practice: Best Paper Award für "MegaMol for Fun and Profit" (zusammen mit S. Grottel, G. Reina, C. Müller und T. Ertl).
  • IEEE VGTC VPG Doctoral Dissertation Award 2016 Honorable Mention
  • Doktorandenpreis des SFB 716 2016 (Auszeichnung für die beste Dissertation in den Jahren 2014/15)

Einladungen, Vorträge und Tutorien

  • 23.03.2011: Einladung zum jährlich stattfindenden Workshop der Fachgruppe "Visual Computing in Medicine" (invited talk)
  • IEEE VisWeek 2012: Teilnahme am Doctoral Colloquium
  • 23.09.2015: Einladung zum Mini-Symposium "Molecular Visualization" (Universität Ulm, invited talk)
  • IEEE VIS 2015: Tutorial "Interactive GPU-based Visualization of Large Dynamic Particle Data" (zusammen mit Martin Falk, Sebastian Grottel und Guido Reina)
  • 14.01.2016: Gastvortrag an der Masaryk-Universität Brünn, Tschechien (Department of Computer Graphics and Design), Titel: "Software and Hardware Infrastructures for Molecular Visualization"
  • 15.01.2016: Gastvortrag an der Technischen Universität Wien, Österreich (Institut für Computergraphik und Algorithmen), Titel: "Interactive Visual Analysis of Biomolecular Simulations"
  • Einladung zum NII Shonan Meeting 086 "Web-based Molecular Graphics" (03.-08.09.2016)

Sonstiges

Bilder

Visualisierungstechniken für Proteine:

Publikationen

2017

Artikel

Molecular Surface Maps
Krone, Michael; Frieß, Florian; Scharnowski, Katrin; Reina, Guido; Fademrecht, Silvia; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Molecular Surface Maps.
IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016) 23 (1) (2017).
[Noch nicht erschienen]

2016

Artikel

Visualization of Molecular Structure: State of the Art Revisited
Kozlíková, Barbora; Krone, Michael; Lindow, Norbert; Falk, Martin; Baaden, Marc; Baum, Daniel; Viola, Ivan; Parulek, Julius; Hege, Hans-Christian: Visualization of Molecular Structure: State of the Art Revisited.
Computer Graphics Forum (2016).
[Noch nicht erschienen]
Visual Analysis of Biomolecular Cavities: State of the Art
Krone, Michael; Kozlíková, Barbora; Lindow, Norbert; Baaden, Marc; Baum, Daniel; Parulek, Julius; Hege, Hans-Christian; Viola, Ivan: Visual Analysis of Biomolecular Cavities: State of the Art.
Computer Graphics Forum 35 (3), S. 527-551 (2016).
An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation
Müller, Christoph; Krone, Michael; Scharnowski, Katrin; Reina, Guido; Ertl, Thomas: An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation.
International Journal of Software and Informatics 9 (3) (2016).
GPU-based Remote Visualization of Dynamic Molecular Data on the Web
Mwalongo, Finian; Krone, Michael; Becher, Michael; Reina, Guido; Ertl, Thomas: GPU-based Remote Visualization of Dynamic Molecular Data on the Web.
Graphical Models (2016).
State-of-the-Art Report in Web-based Visualization
Mwalongo, Finian; Krone, Michael; Reina, Guido; Ertl, Thomas: State-of-the-Art Report in Web-based Visualization.
Computer Graphics Forum 35 (3), S. 553-575 (2016).

Buch

Interactive GPU-based Visualization of Large Dynamic Particle Data
Falk, Martin; Grottel, Sebastian; Krone, Michael; Reina, Guido: Interactive GPU-based Visualization of Large Dynamic Particle Data.
San Rafael, CA: Morgan & Claypool Publishers (2016)

Paper

Interactive Visual Exploration of a Trillion Particles
Schatz, Karsten; Müller, Christoph; Krone, Michael; Schneider, Jens; Reina, Guido; Ertl, Thomas: Interactive Visual Exploration of a Trillion Particles.
In: Symposium on Large Data Analysis and Visualization (LDAV) (2016).
[Noch nicht erschienen]

Paper (Nur Abstract-Review)

MegaMol - for Fun and Profit
Grottel, Sebastian; Reina, Guido; Krone, Michael; Müller, Christoph; Ertl, Thomas: MegaMol - for Fun and Profit.
In: Workshop on Visualization in Practice (2016).
[Noch nicht erschienen]

2015

Artikel

MegaMol – A Prototyping Framework for Particle-based Visualization
Grottel, Sebastian; Krone, Michael; Müller, Christoph; Reina, Guido; Ertl, Thomas: MegaMol – A Prototyping Framework for Particle-based Visualization.
IEEE Transactions on Visualization and Computer Graphics 21 (2), S. 201-214 (2015).

Paper

Visualization of Molecular Structure: State of the Art
Kozlíková, Barbora; Krone, Michael; Lindow, Norbert; Falk, Martin; Baaden, Marc; Baum, Daniel; Viola, Ivan; Parulek, Julius; Hege, Hans-Christian: Visualization of Molecular Structure: State of the Art.
In: Eurographics Conference on Visualization (EuroVis) - STARs, S. 61-81 (2015).
Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization
Krone, Michael; Müller, Christoph; Ertl, Thomas; Kauker, Daniel; Silva, Augusto C.; Salsa, Diana; Gräber, Manuel; Kallert, Manuela: Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization.
In: International Symposium on Visual Information Communication and Interaction (VINCI) 8 (2015).
On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation
Müller, Christoph; Krone, Michael; Scharnowski, Katrin; Reina, Guido; Ertl, Thomas: On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation.
In: International Symposium on Visual Information Communication and Interaction (VINCI) 8 (2015).
Remote Visualization of Dynamic Molecular Data using WebGL
Mwalongo, Finian; Krone, Michael; Becher, Michael; Reina, Guido; Ertl, Thomas: Remote Visualization of Dynamic Molecular Data using WebGL.
In: International Conference on 3D Web Technology (Web3D) 20, S. 115-122 (2015).
Enhancing Visualization of Molecular Simulations using Sonification
Rau, Benjamin; Frieß, Florian; Krone, Michael; Müller, Christoph; Ertl, Thomas: Enhancing Visualization of Molecular Simulations using Sonification.
In: International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR) 1, S. 25-30 (2015).

Paper (Nur Abstract-Review)

On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions
Lawonn, Kai; Krone, Michael; Ertl, Thomas; Preim, Bernhard: On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions.
In: EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization 3 (2015).
On the Reproducibility of our Biomolecular Visualization
Scharnowski, Katrin; Krone, Michael; Reina, Guido; Ertl, Thomas: On the Reproducibility of our Biomolecular Visualization.
In: EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization 3 (2015).

Dissertation

Interactive Visual Analysis of Biomolecular Simulations
Krone, Michael: Interactive Visual Analysis of Biomolecular Simulations. Diss., Universität Stuttgart (2015).

2014

Artikel

Visual Analysis for Space-Time Aggregation of Biomolecular Simulations
Ertl, Thomas; Krone, Michael; Kesselheim, Stefan; Scharnowski, Katrin; Reina, Guido; Holm, Christian: Visual Analysis for Space-Time Aggregation of Biomolecular Simulations.
Faraday Discussions 169 (2014).
Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles
Heinrich, Julian; Krone, Michael; Weiskopf, Daniel; O'Donoghue, Seán: Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles.
Faraday Discussions 169 (2014).
Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions
Lawonn, Kai; Krone, Michael; Ertl, Thomas; Preim, Bernhard: Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions.
Computer Graphics Forum 33 (3), S. 181-190 (2014).
Comparative Visualization of Molecular Surfaces Using Deformable Models
Scharnowski, Katrin; Krone, Michael; Reina, Guido; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Comparative Visualization of Molecular Surfaces Using Deformable Models.
Computer Graphics Forum 33 (3), S. 191-200 (2014).

Paper

Evaluation of Visualizations for Interface Analysis of SPH
Krone, Michael; Huber, Markus; Scharnowski, Katrin; Hirschler, Manuel; Kauker, Daniel; Reina, Guido; Nieken, Ulrich; Weiskopf, Daniel; Ertl, Thomas: Evaluation of Visualizations for Interface Analysis of SPH.
In: EuroVis 2014 Short Papers 3, S. 109-113 (2014).
Visual Analysis of Dynamic Protein Cavities and Binding Sites
Krone, Michael; Kauker, Daniel; Reina, Guido; Ertl, Thomas: Visual Analysis of Dynamic Protein Cavities and Binding Sites.
In: IEEE PacificVis - Visualization Notes 1, S. 301-305 (2014).
Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL
Mwalongo, Finian; Krone, Michael; Karch, Grzegorz K.; Becher, Michael; Reina, Guido; Ertl, Thomas: Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL.
In: International Conference on 3D Web Technology (Web3D'14) 19, S. 133-141 (2014).

2013

Artikel

Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing
Falk, Martin; Krone, Michael; Ertl, Thomas: Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing.
Computer Graphics Forum 32 (8), S. 195-206 (2013).
Evaluation of per-pixel linked lists for distributed rendering and comparative analysis
Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Evaluation of per-pixel linked lists for distributed rendering and comparative analysis.
Computing and Visualization in Science 15 (3), S. 111-121 (2013).
Interactive Extraction and Tracking of Biomolecular Surfaces Features
Krone, Michael; Reina, Guido; Schulz, Christoph; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Interactive Extraction and Tracking of Biomolecular Surfaces Features.
Computer Graphics Forum 32 (3), S. 331–340 (2013).
2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate
Scharnowski, Katrin; Krone, Michael; Sadlo, Filip; Beck, Philipp; Roth, Johannes; Trebin, Hans-Rainer; Ertl, Thomas: 2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate.
IEEE Computer Graphics & Applications 33 (5), S. 9-17 (2013).

Paper

Rendering Molecular Surfaces using Order-Independent Transparency
Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Rendering Molecular Surfaces using Order-Independent Transparency.
In: Eurographics Symposium on Parallel Graphics and Visualization (EGPGV) 13, S. 33-40 (2013).

2012

Paper

Atomistic Visualization of Mesoscopic Whole-Cell Simulations
Falk, Martin; Krone, Michael; Ertl, Thomas: Atomistic Visualization of Mesoscopic Whole-Cell Simulations.
In: EG Workshop on Visual Computing for Biology and Medicine (VCBM), S. 123-130 (2012).
Object-Space Ambient Occlusion for Molecular Dynamics
Grottel, Sebastian; Krone, Michael; Scharnowski, Katrin; Ertl, Thomas: Object-Space Ambient Occlusion for Molecular Dynamics.
In: Proceedings of IEEE Pacific Visualization Symposium 2012, S. 209-216 (2012).
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories
Krone, Michael; Stone, John E.; Ertl, Thomas; Schulten, Klaus: Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories.
In: EuroVis 2012 Short Papers 1, S. 67-71 (2012).

2011

Artikel

GPU-powered tools boost molecular visualization
Chavent, Matthieu; Lévy, Bruno; Krone, Michael; Bidmon, Katrin; Nominé, Jean-Philippe; Ertl, Thomas; Baaden, Marc: GPU-powered tools boost molecular visualization.
Briefings in Bioinformatics 12 (6), S. 689-701 (2011).
Interactive Exploration of Protein Cavities
Krone, Michael; Falk, Martin; Rehm, Sascha; Pleiss, Jürgen; Ertl, Thomas: Interactive Exploration of Protein Cavities.
Computer Graphics Forum 30 (3), S. 673-682 (2011).

Paper

Parallel Contour-Buildup Algorithm for the Molecular Surface
Krone, Michael; Grottel, Sebastian; Ertl, Thomas: Parallel Contour-Buildup Algorithm for the Molecular Surface.
In: Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), S. 17-22 (2011).
Interactive Exploration of Polymer-Solvent Interactions
Thomaß, Bertram; Walter, Jonathan; Krone, Michael; Hasse, Hans; Ertl, Thomas: Interactive Exploration of Polymer-Solvent Interactions.
In: International Workshop on Vision, Modeling and Visualization 16, S. 301-308 (2011).

2010

Paper

Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces
Krone, Michael; Dachsbacher, Carsten; Ertl, Thomas: Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces.
In: International Conference On Bioinformatics and Computational Biology 2010, S. 402-405 (2010).

2009

Artikel

Interactive Visualization of Molecular Surface Dynamics
Krone, Michael; Bidmon, Katrin; Ertl, Thomas: Interactive Visualization of Molecular Surface Dynamics.
IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009) 15 (6), S. 1391-1398 (2009).

2008

Paper

GPU-based Visualisation of Protein Secondary Structure
Krone, Michael; Bidmon, Katrin; Ertl, Thomas: GPU-based Visualisation of Protein Secondary Structure.
In: Proceedings of TP.CG'08, S. 115-122 (2008).